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Atypical Pneumonias

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See also: Managing Pneumonia in the Community, Pneumonia, Lower Respiratory Tract Infection in Children.

An atypical pneumonia tends to present and progress differently from the 'standard' pneumonias due to e.g. Streptococcus pneumoniae and Haemophilus influenzae. The 'classical' atypical pneumonias are due to pulmonary infection with:

Other microorganisms that cause similar patterns of presentation via pulmonary infection include:

  • Chlamydophila psittaci (exposure to birds, particularly ill ones, is a useful clue in the history)
  • Coxiella burnetii (presenting as Q fever)
  • Viral pneumonias including Influenza A, Severe Acute Respiratory Syndrome (SARS), RSV, adenoviridae and pneumonitis due to Varicella (chickenpox pneumonitis)
Epidemiology
  • It is thought that the three main atypical organisms might be implicated in up to 40% of community acquired pneumonias.1
  • However, the precise incidence of these infections is not accurately known, as they are often not identified in clinical practice due to the lack of a readily available, reliable, standard test to confirm the diagnosis (with the possible exception of Legionella).2
  • By the age of 20, 50% of people in the United States have detectable levels of antibody to Chlamydophila pneumoniae.1

Risk factors

  • Mycoplasma and Chlamydophila spread by person to person contact, and spread is most common in closed populations, e.g. schools, offices.
  • Legionellae are found most commonly in freshwater and man-made water systems. Man-made systems for heating and cooling water can provide breeding grounds for Legionellae. Condensers, showers, whirlpools, cooling towers and respiratory equipment have all been implicated in outbreaks, and all such installations in public use should be inspected regularly.
Presentation

  • Chlamydophila pneumoniae:4
    • Gradual onset which may show improvement before worsening again; incubation period 3–4 weeks.
    • Initial non-specific URTI symptoms lead on to bronchitic or pneumonic features.
    • Most of those infected remain quite well or are asymptomatic.
    • Cough with scanty sputum is a prominent feature.
    • Hoarseness is a common feature.
    • Headache affects the majority of symptomatic sufferers.
    • Fever is relatively unusual.
    • Symptoms may drag on for weeks or months, despite a course of appropriate antibiotics.
    • Where it causes significant problems, this may be due to secondary infection or co-existing illness, e.g. diabetes.
  • Legionella pneumophila:5
    • Tends to be the most severe of the atypical pneumonias.
    • Focal outbreaks centred around poorly-maintained air-conditioning or humidification systems (although this is often noted retrospectively by public health physicians).
    • 2–10 days incubation period.
    • Initial mild headache and myalgia leading to high fever, chills and repeated rigors; non-chest symptoms often predominate early on.
    • Cough is nearly always present, initially unproductive, but may lead to expectoration later.
    • Dyspnoea, pleuritic pain and haemoptysis are not uncommon.
    • Gastrointestinal upset such as diarrhoea, nausea and vomiting or loss of appetite/anorexia may occur.
    • There may be neurological complications such as confusion, disorientation and focal neurological deficit.
    • Arthralgia and myalgia are often reported.
    • Severe complications include pancreatitis, peritonitis, pericarditis, myocarditis, endocarditis and glomerulonephritis.

Signs in atypical pneumonia

  • Vital signs should be checked.
  • Look for evidence of extra-thoracic involvement if an atypical pneumonia is suspected.
  • On the whole, chest signs are not helpful. Indeed, it is often the discordance between the chest signs and the illness of the patient, or the floridity of initial CXR appearance, that raises the suspicion of an atypical pneumonia.
  • Non-specific chest signs and evidence of consolidation may be found, but this is much less common than in the 'standard' pneumonias.
  • There may be signs in other systems due to complications of the infection.
Differential diagnosis
Investigations
Useful investigations to diagnose atypical pneumonias
Cause of pneumonia: Mycoplasma pneumoniae Legionella pneumophila Chlamydophila (Chlamydia) pneumoniae
Blood tests May be raised WCC or rarely evidence of haemolytic anaemia. ESR may be elevated. Serology titres and complement fixation tests/ELISA can help to confirm the diagnosis. FBC may show left shift. Severe cases may have DIC evident on FBC/INR. Hyponatraemia may occur due to syndrome of inappropriate ADH secretion. Urea/creatinine can be raised if complicated by renal failure or dehydration. LFTs often non-specifically deranged. CK may be elevated in rhabdomyolysis. Serological tests on blood or urine may be used to confirm diagnosis. Usually non-specific and unhelpful. Serology titres or polymerase chain reaction tests may be used to confirm the diagnosis.
CXR Usually single lower-lobe bronchopneumonia pattern with lobar consolidation rare. Other possible patterns include atelectasis, nodular infiltration akin to TB/sarcoidosis, hilar adenopathy and rarely pleural effusion. 50% have pleural effusion. Patchy alveolar infiltrates may be seen. CXR can take up to 4 months to return to normal and may initially progress despite therapy. Usually lower-lobe single subsegmental infiltrate. Pleural effusion found in up to a quarter of cases. Can progress to ARDS. CXR changes may take up to 3 months to resolve.
ABGs may be checked to assess respiratory function in acute, severe cases of community-acquired pneumonia. Similarly, blood cultures should be taken to aid subsequent microbiological diagnosis. In cases of atypical pneumonia where there is evidence of focal or global cerebral impairment, an LP should be considered.
Management
  • Severe cases need to be managed in hospital with intravenous antibiotics, oxygen and possibly respiratory support.
  • Atypical pneumonias are usually treated as for other community-acquired pneumonias, at least initially.
  • There is no evidence that routinely giving antibiotics active against atypical organisms leads to better outcomes in non-severe community-based cases of pneumonia.6
  • Macrolides, such as erythromycin, clarithromycin and azithromycin, have been shown to be effective in the treatment of all three infective organisms.
  • Erythromycin tends to be less well tolerated, and although effective in the treatment of Mycoplasma and Chlamydophila, there are few trials demonstrating its efficacy in the treatment of Legionella.1
  • Severe Legionella infections may require rifampicin as well as a macrolide.
  • Tetracycline, doxycycline and fluoroquinolones are also effective against all three infective organisms.
Complications
  • Mycoplasma pneumoniae:
    • Rashes such as erythema multiforme, erythema nodosum and urticaria
    • Neurological complications like Guillain-Barré syndrome, transverse myelitis, cerebellar ataxia and aseptic meningitis
    • Haematological complications such as cold agglutinin disease and haemolytic anaemia
    • Joint symptoms like arthralgia and arthritis
    • Cardiac complications such as pericarditis and myocarditis
    • Pancreatitis (rarely)
  • Legionella pneumophila:
    • Gastrointestinal upset
    • There may be neurological complications such as confusion, disorientation and focal neurological deficit
    • Arthralgia and myalgia are often reported
    • Pancreatitis, peritonitis
    • Pericarditis, myocarditis, endocarditis
    • Glomerulonephritis
Prognosis
  • The prognosis for Mycoplasma pneumoniae is generally good with most patients making a full recovery. The mortality rate is approximately 1.4%, with the majority of deaths occurring in the elderly or patients with co-existing pathologies.1
  • Most cases of Chlamydophilal infection are mild. The mortality rate is approximately 9%, usually associated with secondary infection or underlying disease.1
  • Legionella has the most severe course, and may cause significant morbidity if not treated early. The mortality rate is 14%.1
Prevention

Adequate maintenance and microbiological testing of humidifier devices/cooling systems in buildings help to reduce the incidence of Legionella pneumophila.


Document references
  1. Thibodeau KP, Viera AJ; Atypical pathogens and challenges in community-acquired pneumonia. Am Fam Physician. 2004 Apr 1;69(7):1699-706. [abstract]
  2. File TM; Community-acquired pneumonia. Lancet. 2003 Dec 13;362(9400):1991-2001. [abstract]
  3. Cantu S; Pneumonia, Mycoplasma. eMedicine, February 2006; Concise overview from A&E perspective
  4. Oba Y, Salzman G; Chlamydial Pneumonias. eMedicine, February 2007; Overview of infection with the three main chlamydial species that cause respiratory disease in humans.
  5. Smeeks F, Savage S; Legionnnaires Disease. eMedicine, October 2006; Concise emergency medicine overview
  6. Mills GD, Oehley MR, Arrol B; Effectiveness of beta lactam antibiotics compared with antibiotics active against atypical pathogens in non-severe community acquired pneumonia: meta-analysis. BMJ. 2005 Feb 26;330(7489):456. Epub 2005 Jan 31. [abstract]

Internet and further reading Acknowledgements EMIS is grateful to Dr Colin Tidy for writing this article. The final copy has passed scrutiny by the independent Mentor GP reviewing team. ©EMIS 2009.
Document ID: 1276
Document Version: 25
Document Reference: bgp605
Last Updated: 27 Jun 2008
Planned Review: 27 Jun 2010

The authors and editors of this article are employed to create accurate and up to date content reflecting reliable research evidence, guidance and best clinical practice. They are free from any commercial conflicts of interest. Find out more about updating.

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